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Analytical and Computational Methods

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Using variability in gene expression as a tool for studying gene regulation

Focus Article
Olivia Padovan‐Merhar, Arjun Raj
Published Online: Aug 29 2013
DOI:10.1002/wsbm.1243

Abstract Full article on Wiley Online Library:   HTML | PDF
Computational approaches for understanding energy metabolism

Focus Article
Alexander A. Shestov, Brandon Barker, Zhenglong Gu, Jason W. Locasale
Published Online: Jul 29 2013
DOI:10.1002/wsbm.1238

Abstract Full article on Wiley Online Library:   HTML | PDF
Mathematical modeling of kidney transport

Advanced Review
Anita T. Layton
Published Online: Jul 12 2013
DOI:10.1002/wsbm.1232

Abstract Full article on Wiley Online Library:   HTML | PDF
Multiscale image‐based modeling and simulation of gas flow and particle transport in the human lungs

Focus Article
Ching‐Long Lin, Merryn H. Tawhai, Eric A. Hoffman
Published Online: Jul 10 2013
DOI:10.1002/wsbm.1234

Abstract Full article on Wiley Online Library:   HTML | PDF
Excitable behavior in amoeboid chemotaxis

Focus Article
Changji Shi, Pablo A. Iglesias
Published Online: Jun 11 2013
DOI:10.1002/wsbm.1230

Abstract Full article on Wiley Online Library:   HTML | PDF
Engineered genetic information processing circuits

Overview
Hao Qi, Andrew Blanchard, Ting Lu
Published Online: Feb 26 2013
DOI:10.1002/wsbm.1216

Abstract Full article on Wiley Online Library:   HTML | PDF
Modeling cellular compartmentation in one‐carbon metabolism

Advanced Review
Marco Scotti, Lorenzo Stella, Emily J. Shearer, Patrick J. Stover
Published Online: Feb 13 2013
DOI:10.1002/wsbm.1209

Abstract Full article on Wiley Online Library:   HTML | PDF
Bioimage informatics for understanding spatiotemporal dynamics of cellular processes

Advanced Review
Ge Yang
Published Online: Feb 13 2013
DOI:10.1002/wsbm.1214

Abstract Full article on Wiley Online Library:   HTML | PDF
Genomics and epigenomics of colorectal cancer

Advanced Review
Michal‐Ruth Schweiger, Michelle Hussong, Christina Röhr, Hans Lehrach
Published Online: Jan 16 2013
DOI:10.1002/wsbm.1206

Abstract Full article on Wiley Online Library:   HTML | PDF
Model‐based design of experiments for cellular processes

Advanced Review
Ankush Chakrabarty, Gregery T. Buzzard, Ann E. Rundell
Published Online: Jan 04 2013
DOI:10.1002/wsbm.1204

Abstract Full article on Wiley Online Library:   HTML | PDF
Accelerating cancer systems biology research through Semantic Web technology

Overview
Zhihui Wang, Jonathan Sagotsky, Thomas Taylor, Patrick Shironoshita, Thomas S. Deisboeck
Published Online: Nov 27 2012
DOI:10.1002/wsbm.1200

Abstract Full article on Wiley Online Library:   HTML | PDF
Promise of personalized omics to precision medicine

Advanced Review
Rui Chen, Michael Snyder
Published Online: Nov 26 2012
DOI:10.1002/wsbm.1198

Abstract Full article on Wiley Online Library:   HTML | PDF
From base pair to bedside: molecular simulation and the translation of genomics to personalized medicine

Advanced Review
David W. Wright, Shunzhou Wan, Nour Shublaq, Stefan J. Zasada, Peter V. Coveney
Published Online: Aug 15 2012
DOI:10.1002/wsbm.1186

Abstract Full article on Wiley Online Library:   HTML | PDF
Mitochondrial network energetics in the heart

Advanced Review
Miguel A. Aon, Sonia Cortassa
Published Online: Aug 15 2012
DOI:10.1002/wsbm.1188

Abstract Full article on Wiley Online Library:   HTML | PDF
Complexity and the reductionism–holism debate in systems biology

Overview
Fulvio Mazzocchi
Published Online: Jul 03 2012
DOI:10.1002/wsbm.1181

Abstract Full article on Wiley Online Library:   HTML | PDF
Systems biology approaches to toll‐like receptor signaling

Focus Article
Alexis Vandenbon, Shunsuke Teraguchi, Shizuo Akira, Kiyoshi Takeda, Daron M. Standley
Published Online: Jun 19 2012
DOI:10.1002/wsbm.1178

Abstract Full article on Wiley Online Library:   HTML | PDF
Recent approaches to the prioritization of candidate disease genes

Advanced Review
Nadezhda T. Doncheva, Tim Kacprowski, Mario Albrecht
Published Online: Jun 11 2012
DOI:10.1002/wsbm.1177

Abstract Full article on Wiley Online Library:   HTML | PDF
Isotope labeling experiments in metabolomics and fluxomics

Advanced Review
Sebastian Klein, Elmar Heinzle
Published Online: Mar 23 2012
DOI:10.1002/wsbm.1167

Abstract Full article on Wiley Online Library:   HTML | PDF
Linking genome to epigenome

Focus Article
Guo‐Cheng Yuan
Published Online: Feb 17 2012
DOI:10.1002/wsbm.1165

Abstract Full article on Wiley Online Library:   HTML | PDF
Reverse‐engineering human regulatory networks

Advanced Review
Andrea Califano, Gabrielle Rieckhof, Celine Lefebvre
Published Online: Jan 13 2012
DOI:10.1002/wsbm.1159

Abstract Full article on Wiley Online Library:   HTML | PDF
Mass spectrometry‐based proteomics: qualitative identification to activity‐based protein profiling

Advanced Review
Job D. Cardoza, Jignesh R. Parikh, Scott B. Ficarro, Jarrod A. Marto
Published Online: Jan 09 2012
DOI:10.1002/wsbm.166

Abstract Full article on Wiley Online Library:   HTML | PDF
Virtual Cell: computational tools for modeling in cell biology

Advanced Review
Diana C. Resasco, Fei Gao, Frank Morgan, Igor L. Novak, James C. Schaff, Boris M. Slepchenko
Published Online: Dec 02 2011
DOI:10.1002/wsbm.165

Abstract Full article on Wiley Online Library:   HTML | PDF
Integrative physical oncology

Opinion
Haralampos Hatzikirou, Arnaud Chauviere, Amy L. Bauer, André Leier, Michael T. Lewis, Paul Macklin, Tatiana T. Marquez‐Lago, Elaine L. Bearer, Vittorio Cristini
Published Online: Aug 18 2011
DOI:10.1002/wsbm.158

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Mathematical models in biology: from molecules to life

Advanced Review
Yiannis N. Kaznessis
Published Online: Feb 18 2011
DOI:10.1002/wsbm.142

Abstract Full article on Wiley Online Library:   HTML | PDF
Drug repurposing and adverse event prediction using high‐throughput literature analysis

Advanced Review
Spyros N. Deftereos, Christos Andronis, Ellen J. Friedla, Aris Persidis, Andreas Persidis
Published Online: Feb 16 2011
DOI:10.1002/wsbm.147

Abstract Full article on Wiley Online Library:   HTML | PDF
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