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RNA Structure, Dynamics, and Chemistry

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Methods for analysis of circular RNAs

Focus Article
Poonam R. Pandey, Rachel Munk, Gautam Kundu, Supriyo De, Kotb Abdelmohsen, Myriam Gorospe
Published Online: Sep 05 2019
DOI:10.1002/wrna.1566

Abstract Full article on Wiley Online Library:   HTML | PDF
Advances that facilitate the study of large RNA structure and dynamics by nuclear magnetic resonance spectroscopy

Primer
Huaqun Zhang, Sarah C. Keane
Published Online: Apr 25 2019
DOI:10.1002/wrna.1541

Abstract Full article on Wiley Online Library:   HTML | PDF
The cellular landscape of mid‐size noncoding RNA

Advanced Review
Sherif Abou‐Elela, Michelle Scott, Laurence Faucher‐Giguère, Vincent Boivin
Published Online: Mar 06 2019
DOI:10.1002/wrna.1530

Abstract Full article on Wiley Online Library:   HTML | PDF
RNAs in the spliceosome: Insight from cryoEM structures

Advanced Review
Lingdi Zhang, Anne Vielle, Sara Espinosa, Rui Zhao
Published Online: Feb 06 2019
DOI:10.1002/wrna.1523

Abstract Full article on Wiley Online Library:   HTML | PDF
The evolution of RNA structural probing methods: From gels to next‐generation sequencing

Advanced Review
Elodie Mailler, Jean‐Christophe Paillart, Roland Marquet, Redmond P. Smyth, Valerie Vivet‐Boudou
Published Online: Nov 28 2018
DOI:10.1002/wrna.1518

Abstract Full article on Wiley Online Library:   HTML | PDF
Noncanonical RNA‐capping: Discovery, mechanism, and physiological role debate

Focus Article
Christina Julius, Yulia Yuzenkova
Published Online: Oct 23 2018
DOI:10.1002/wrna.1512

Abstract Full article on Wiley Online Library:   HTML | PDF
Noncanonical features and modifications on the 5′‐end of bacterial sRNAs and mRNAs

Advanced Review
Nikita Vasilyev, Ang Gao, Alexander Serganov
Published Online: Oct 01 2018
DOI:10.1002/wrna.1509

Abstract Full article on Wiley Online Library:   HTML | PDF
Guanidine‐sensing riboswitches: How do they work and what do they regulate?

Advanced Review
Ailong Ke, Robert A. Battaglia
Published Online: Apr 26 2018
DOI:10.1002/wrna.1482

Abstract Full article on Wiley Online Library:   HTML | PDF
Hfq chaperone brings speed dating to bacterial sRNA

Focus Article
Andrew Santiago‐Frangos, Sarah A. Woodson
Published Online: Apr 06 2018
DOI:10.1002/wrna.1475

Abstract Full article on Wiley Online Library:   HTML | PDF
Genetic variants in mRNA untranslated regions

Overview
Valeria Orrù, Michael B. Whalen, M. Laura Idda, Maristella Steri
Published Online: Mar 26 2018
DOI:10.1002/wrna.1474

Abstract Full article on Wiley Online Library:   HTML | PDF
New perspectives on telomerase RNA structure and function

Focus Article
Cherie Musgrove, Linnea I. Jansson, Michael D. Stone
Published Online: Nov 09 2017
DOI:10.1002/wrna.1456

Abstract Full article on Wiley Online Library:   HTML | PDF
RNA versatility, flexibility, and thermostability for practice in RNA nanotechnology and biomedical applications

Advanced Review
Peixuan Guo, Hang Yu, Haibo Hu, Shanqing Gu, Zhengyi Zhao, Fengmei Pi, Farzin Haque
Published Online: Nov 03 2017
DOI:10.1002/wrna.1452

Abstract Full article on Wiley Online Library:   HTML | PDF
Physics‐based all‐atom modeling of RNA energetics and structure

Advanced Review
Douglas H. Turner, David H. Mathews, Jianbo Zhao, Louis G. Smith
Published Online: Aug 17 2017
DOI:10.1002/wrna.1422

Abstract Full article on Wiley Online Library:   HTML | PDF
RNA structure, binding, and coordination in Arabidopsis

Focus Article
Shawn W. Foley, Marianne C. Kramer, Brian D. Gregory
Published Online: Jun 28 2017
DOI:10.1002/wrna.1426

Abstract Full article on Wiley Online Library:   HTML | PDF
Insights into RNA structure and dynamics from recent NMR and X‐ray studies of the Neurospora Varkud satellite ribozyme

Advanced Review
Pierre Dagenais, Nicolas Girard, Eric Bonneau, Pascale Legault
Published Online: Apr 06 2017
DOI:10.1002/wrna.1421

Abstract Full article on Wiley Online Library:   HTML | PDF
Structures of RNA repeats associated with neurological diseases

Overview
Leszek Błaszczyk, Wojciech Rypniewski, Agnieszka Kiliszek
Published Online: Jan 28 2017
DOI:10.1002/wrna.1412

Abstract Full article on Wiley Online Library:   HTML | PDF
Unwinding the twister ribozyme: from structure to mechanism

Advanced Review
Jennifer Gebetsberger, Ronald Micura
Published Online: Nov 14 2016
DOI:10.1002/wrna.1402

Abstract Full article on Wiley Online Library:   HTML | PDF
How to understand atomistic molecular dynamics simulations of RNA and protein–RNA complexes?

Advanced Review
Jiří Šponer, Miroslav Krepl, Pavel Banáš, Petra Kührová, Marie Zgarbová, Petr Jurečka, Marek Havrila, Michal Otyepka
Published Online: Nov 10 2016
DOI:10.1002/wrna.1405

Abstract Full article on Wiley Online Library:   HTML | PDF
Advances in RNA molecular dynamics: a simulator's guide to RNA force fields

Advanced Review
Sweta Vangaveti, Srivathsan V. Ranganathan, Alan A. Chen
Published Online: Oct 04 2016
DOI:10.1002/wrna.1396

Abstract Full article on Wiley Online Library:   HTML | PDF
mRNA methylation by NSUN2 in cell proliferation

Focus Article
Wengong Wang
Published Online: Jul 22 2016
DOI:10.1002/wrna.1380

Abstract Full article on Wiley Online Library:   HTML | PDF
Transcending the prediction paradigm: novel applications of SHAPE to RNA function and evolution

Advanced Review
Katrina M. Kutchko, Alain Laederach
Published Online: Jul 10 2016
DOI:10.1002/wrna.1374

Abstract Full article on Wiley Online Library:   HTML | PDF
Translating the epitranscriptome

Advanced Review
Thomas Philipp Hoernes, Matthias David Erlacher
Published Online: Jun 27 2016
DOI:10.1002/wrna.1375

Abstract Full article on Wiley Online Library:   HTML | PDF
Going global: the new era of mapping modifications in RNA

Advanced Review
Patrick A. Limbach, Mellie June Paulines
Published Online: Jun 01 2016
DOI:10.1002/wrna.1367

Abstract Full article on Wiley Online Library:   HTML | PDF
Lights, camera, action! Capturing the spliceosome and pre‐mRNA splicing with single‐molecule fluorescence microscopy

Advanced Review
Aaron A. Hoskins, Ian S. Norden, Alexander C. DeHaven
Published Online: May 20 2016
DOI:10.1002/wrna.1358

Abstract Full article on Wiley Online Library:   HTML | PDF
Structural insights into ribosome translocation

Advanced Review
Clarence Ling, Dmitri N. Ermolenko
Published Online: Apr 27 2016
DOI:10.1002/wrna.1354

Abstract Full article on Wiley Online Library:   HTML | PDF
SAXS studies of RNA: structures, dynamics, and interactions with partners

Advanced Review
Yujie Chen, Lois Pollack
Published Online: Apr 12 2016
DOI:10.1002/wrna.1349

Abstract Full article on Wiley Online Library:   HTML | PDF
Regulatory effects of cotranscriptional RNA structure formation and transitions

Advanced Review
Jin‐Zhi Zhang, Chun‐Gen Hu, Sheng‐Rui Liu
Published Online: Mar 29 2016
DOI:10.1002/wrna.1350

Abstract Full article on Wiley Online Library:   HTML | PDF
siRNA and RNAi optimization

Advanced Review
Adele Alagia, Ramon Eritja
Published Online: Feb 02 2016
DOI:10.1002/wrna.1337

Abstract Full article on Wiley Online Library:   HTML | PDF
Prohead RNA: a noncoding viral RNA of novel structure and function

Advanced Review
Alyssa C. Hill, Laura E. Bartley, Susan J. Schroeder
Published Online: Jan 25 2016
DOI:10.1002/wrna.1330

Abstract Full article on Wiley Online Library:   HTML | PDF
Structure and mechanism of the T‐box riboswitches

Advanced Review
Adrian R. Ferré‐D'Amaré, Jinwei Zhang
Published Online: May 08 2015
DOI:10.1002/wrna.1285

Abstract Full article on Wiley Online Library:   HTML | PDF
An introduction to recurrent nucleotide interactions in RNA

Overview
Blake A. Sweeney, Poorna Roy, Neocles B. Leontis
Published Online: Oct 29 2014
DOI:10.1002/wrna.1258

Abstract Full article on Wiley Online Library:   HTML | PDF
RNA triplexes: from structural principles to biological and biotech applications

Advanced Review
Gitali Devi, Yuan Zhou, Zhensheng Zhong, Desiree‐Faye Kaixin Toh, Gang Chen
Published Online: Aug 22 2014
DOI:10.1002/wrna.1261

Abstract Full article on Wiley Online Library:   HTML | PDF
RNA structural analysis by evolving SHAPE chemistry

Advanced Review
Robert C. Spitale, Ryan A. Flynn, Eduardo A. Torre, Eric T. Kool, Howard Y. Chang
Published Online: Aug 15 2014
DOI:10.1002/wrna.1253

Abstract Full article on Wiley Online Library:   HTML | PDF
Structure and function of pseudoknots involved in gene expression control

Advanced Review
Alexander Serganov, Alla Peselis
Published Online: Jul 08 2014
DOI:10.1002/wrna.1247

Abstract Full article on Wiley Online Library:   HTML | PDF
Recognition modes of RNA tetraloops and tetraloop‐like motifs by RNA‐binding proteins

Advanced Review
Roopa Thapar, Andria P. Denmon, Edward P. Nikonowicz
Published Online: Oct 03 2013
DOI:10.1002/wrna.1196

Abstract Full article on Wiley Online Library:   HTML | PDF
The emerging role of triple helices in RNA biology

Advanced Review
Nicholas K. Conrad
Published Online: Sep 30 2013
DOI:10.1002/wrna.1194

Abstract Full article on Wiley Online Library:   HTML | PDF
RNA Tectonics (tectoRNA) for RNA nanostructure design and its application in synthetic biology

Advanced Review
Junya Ishikawa, Hiroyuki Furuta, Yoshiya Ikawa
Published Online: Jul 08 2013
DOI:10.1002/wrna.1185

Abstract Full article on Wiley Online Library:   HTML | PDF
Structure and function of the T‐loop structural motif in noncoding RNAs

Advanced Review
Alfonso Mondragón, Bhaskar Chetnani, Clarence W. Chan
Published Online: Jun 10 2013
DOI:10.1002/wrna.1175

Abstract Full article on Wiley Online Library:   HTML | PDF
The GA‐minor submotif as a case study of RNA modularity, prediction, and design

Advanced Review
Wade W. Grabow, Zhuoyun Zhuang, Joan‐Emma Shea, Luc Jaeger
Published Online: Feb 01 2013
DOI:10.1002/wrna.1153

Abstract Full article on Wiley Online Library:   HTML | PDF
Computational analysis of noncoding RNAs

Advanced Review
Stefan Washietl, Sebastian Will, David A. Hendrix, Loyal A. Goff, John L. Rinn, Bonnie Berger, Manolis Kellis
Published Online: Sep 18 2012
DOI:10.1002/wrna.1134

Abstract Full article on Wiley Online Library:   HTML | PDF
The structure and folding of kink turns in RNA

Advanced Review
David M. J. Lilley
Published Online: Sep 13 2012
DOI:10.1002/wrna.1136

Abstract Full article on Wiley Online Library:   HTML | PDF
Current advances in Phi29 pRNA biology and its application in drug delivery

Advanced Review
Xin Ye, Maged Hemida, Huifang M. Zhang, Paul Hanson, Qiu Ye, Decheng Yang
Published Online: Feb 23 2012
DOI:10.1002/wrna.1111

Abstract Full article on Wiley Online Library:   HTML | PDF
Cryo‐electron microscopy of ribosomal complexes in cotranslational folding, targeting, and translocation

Advanced Review
Kèvin Knoops, Guy Schoehn, Christiane Schaffitzel
Published Online: Nov 17 2011
DOI:10.1002/wrna.119

Abstract Full article on Wiley Online Library:   HTML | PDF
Structure of transfer RNAs: similarity and variability

Advanced Review
Richard Giegé, Frank Jühling, Joern Pütz, Peter Stadler, Claude Sauter, Catherine Florentz
Published Online: Sep 28 2011
DOI:10.1002/wrna.103

Abstract Full article on Wiley Online Library:   HTML | PDF
RNA dynamics: perspectives from spin labels

Advanced Review
Phuong Nguyen, Peter Z. Qin
Published Online: Aug 22 2011
DOI:10.1002/wrna.104

Abstract Full article on Wiley Online Library:   HTML | PDF
Examining the relationship between RNA function and motion using nuclear magnetic resonance

Advanced Review
Michael F. Bardaro, Gabriele Varani
Published Online: Aug 17 2011
DOI:10.1002/wrna.108

Abstract Full article on Wiley Online Library:   HTML | PDF
Recognition of S‐adenosylmethionine by riboswitches

Advanced Review
Robert T. Batey
Published Online: Jan 12 2011
DOI:10.1002/wrna.63

Abstract Full article on Wiley Online Library:   HTML | PDF
3′ processing of eukaryotic precursor tRNAs

Advanced Review
Richard J. Maraia, Tek N. Lamichhane
Published Online: Nov 23 2010
DOI:10.1002/wrna.64

Abstract Full article on Wiley Online Library:   HTML | PDF
The nucleolus: structure/function relationship in RNA metabolism

Advanced Review
Danièle Hernandez‐Verdun, Pascal Roussel, Marc Thiry, Valentina Sirri, Denis L. J. Lafontaine
Published Online: Sep 22 2010
DOI:10.1002/wrna.39

Abstract Full article on Wiley Online Library:   HTML | PDF
DEAD‐box proteins as RNA helicases and chaperones

Advanced Review
Inga Jarmoskaite, Rick Russell
Published Online: Sep 20 2010
DOI:10.1002/wrna.50

Abstract Full article on Wiley Online Library:   HTML | PDF
Repeat expansion diseases: when a good RNA turns bad

Advanced Review
Alexa M. Dickson, Carol J. Wilusz
Published Online: May 25 2010
DOI:10.1002/wrna.18

Abstract Full article on Wiley Online Library:   HTML | PDF
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