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WIREs RNA
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Computational Analyses of RNA

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Computational approaches for circular RNA analysis

Overview
Tobias Jakobi, Christoph Dieterich
Published Online: Feb 20 2019
DOI:10.1002/wrna.1528

Abstract Full article on Wiley Online Library:   HTML | PDF
Environmental influences on RNA processing: Biochemical, molecular and genetic regulators of cellular response

Advanced Review
Athma A. Pai, Francesca Luca
Published Online: Sep 14 2018
DOI:10.1002/wrna.1503

Abstract Full article on Wiley Online Library:   HTML | PDF
High throughput sequencing revolution reveals conserved fundamentals of U‐indel editing

Advanced Review
Sara L. Zimmer, Rachel M. Simpson, Laurie K. Read
Published Online: Jun 11 2018
DOI:10.1002/wrna.1487

Abstract Full article on Wiley Online Library:   HTML | PDF
A 360° view of circular RNAs: From biogenesis to functions

Advanced Review
Jeremy E. Wilusz
Published Online: Apr 14 2018
DOI:10.1002/wrna.1478

Abstract Full article on Wiley Online Library:   HTML | PDF
Genetic variants in mRNA untranslated regions

Overview
Maristella Steri, M. Laura Idda, Michael B. Whalen, Valeria Orrù
Published Online: Mar 26 2018
DOI:10.1002/wrna.1474

Abstract Full article on Wiley Online Library:   HTML | PDF
Physics‐based all‐atom modeling of RNA energetics and structure

Advanced Review
Louis G. Smith, Jianbo Zhao, David H. Mathews, Douglas H. Turner
Published Online: Aug 17 2017
DOI:10.1002/wrna.1422

Abstract Full article on Wiley Online Library:   HTML | PDF
Microexons: discovery, regulation, and function

Advanced Review
Dmytro Ustianenko, Sebastien M. Weyn‐Vanhentenryck, Chaolin Zhang
Published Online: Feb 11 2017
DOI:10.1002/wrna.1418

Abstract Full article on Wiley Online Library:   HTML | PDF
Bioinformatic tools for analysis of CLIP ribonucleoprotein data

Focus Article
Supriyo De, Myriam Gorospe
Published Online: Dec 23 2016
DOI:10.1002/wrna.1404

Abstract Full article on Wiley Online Library:   HTML | PDF
Advances in RNA molecular dynamics: a simulator's guide to RNA force fields

Advanced Review
Sweta Vangaveti, Srivathsan V. Ranganathan, Alan A. Chen
Published Online: Oct 04 2016
DOI:10.1002/wrna.1396

Abstract Full article on Wiley Online Library:   HTML | PDF
Identifying fusion transcripts using next generation sequencing

Advanced Review
Shailesh Kumar, Sundus Khalid Razzaq, Angie Duy Vo, Mamta Gautam, Hui Li
Published Online: Aug 02 2016
DOI:10.1002/wrna.1382

Abstract Full article on Wiley Online Library:   HTML | PDF
Evolutionary clues in lncRNAs

Advanced Review
Anne Nitsche, Peter F. Stadler
Published Online: Jul 19 2016
DOI:10.1002/wrna.1376

Abstract Full article on Wiley Online Library:   HTML | PDF
Transcending the prediction paradigm: novel applications of SHAPE to RNA function and evolution

Advanced Review
Katrina M. Kutchko, Alain Laederach
Published Online: Jul 10 2016
DOI:10.1002/wrna.1374

Abstract Full article on Wiley Online Library:   HTML | PDF
New insights from cluster analysis methods for RNA secondary structure prediction

Advanced Review
Emily Rogers, Christine Heitsch
Published Online: Mar 11 2016
DOI:10.1002/wrna.1334

Abstract Full article on Wiley Online Library:   HTML | PDF
Functionalities of expressed messenger RNAs revealed from mutant phenotypes

Focus Article
Ben‐Yang Liao, Meng‐Pin Weng
Published Online: Jan 07 2016
DOI:10.1002/wrna.1329

Abstract Full article on Wiley Online Library:   HTML | PDF
Splicing noncoding RNAs from the inside out

Advanced Review
Li Yang
Published Online: Oct 01 2015
DOI:10.1002/wrna.1307

Abstract Full article on Wiley Online Library:   HTML | PDF
Regulatory RNAs discovered in unexpected places

Advanced Review
Jun Wei Pek, Katsutomo Okamura
Published Online: Oct 01 2015
DOI:10.1002/wrna.1309

Abstract Full article on Wiley Online Library:   HTML | PDF
Biogenesis, identification, and function of exonic circular RNAs

Advanced Review
Iju Chen, Chia‐Ying Chen, Trees‐Juen Chuang
Published Online: Jul 31 2015
DOI:10.1002/wrna.1294

Abstract Full article on Wiley Online Library:   HTML | PDF
Computational challenges, tools, and resources for analyzing co‐ and post‐transcriptional events in high throughput

Advanced Review
Emad Bahrami‐Samani, Dat T. Vo, Patricia Rosa de Araujo, Christine Vogel, Andrew D. Smith, Luiz O. F. Penalva, Philip J. Uren
Published Online: Dec 16 2014
DOI:10.1002/wrna.1274

Abstract Full article on Wiley Online Library:   HTML | PDF
Understanding principles of miRNA target recognition and function through integrated biological and bioinformatics approaches

Advanced Review
Adam P. Carroll, Gregory J. Goodall, Bing Liu
Published Online: Jan 23 2014
DOI:10.1002/wrna.1217

Abstract Full article on Wiley Online Library:   HTML | PDF
New perspectives on the diversification of the RNA interference system: insights from comparative genomics and small RNA sequencing

Advanced Review
Alexander Maxwell Burroughs, Yoshinari Ando, L Aravind
Published Online: Dec 05 2013
DOI:10.1002/wrna.1210

Abstract Full article on Wiley Online Library:   HTML | PDF
Finding the target sites of RNA‐binding proteins

Advanced Review
Xiao Li, Hilal Kazan, Howard D. Lipshitz, Quaid D. Morris
Published Online: Nov 11 2013
DOI:10.1002/wrna.1201

Abstract Full article on Wiley Online Library:   HTML | PDF
RNA dot plots: an image representation for RNA secondary structure analysis and manipulations

Advanced Review
Alexander Churkin, Danny Barash
Published Online: Feb 05 2013
DOI:10.1002/wrna.1154

Abstract Full article on Wiley Online Library:   HTML | PDF
Computational biology of RNA interactions

Advanced Review
Christoph Dieterich, Peter F. Stadler
Published Online: Nov 08 2012
DOI:10.1002/wrna.1147

Abstract Full article on Wiley Online Library:   HTML | PDF
Computational analysis of noncoding RNAs

Advanced Review
Stefan Washietl, Sebastian Will, David A. Hendrix, Loyal A. Goff, John L. Rinn, Bonnie Berger, Manolis Kellis
Published Online: Sep 18 2012
DOI:10.1002/wrna.1134

Abstract Full article on Wiley Online Library:   HTML | PDF
Mechanisms and implications of programmed translational frameshifting

Advanced Review
Jonathan D. Dinman
Published Online: Jun 19 2012
DOI:10.1002/wrna.1126

Abstract Full article on Wiley Online Library:   HTML | PDF
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