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WIREs Data Mining Knowl Discov
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Noncoding RNAs and their annotation using metagenomics algorithms

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This article provides an overview of noncoding RNAs (ncRNA) involving their structure, function, computational methods for structure prediction and the algorithms for analyzing ncRNAs from metagenome samples. Different techniques for ncRNA structure prediction such as dynamic programming (DP), genetic algorithm (GA), artificial neural network (ANN) and stochastic context‐free grammar (SCFG) are discussed. The basic concepts of metagenomics along with their biological basis are mentioned and the relevance of ncRNAs in metagenomics is also explored. Similarity and composition based computational methods for analyzing noncoding sequences in metagenomes are then mentioned along with their biological findings. An extensive bibliography is included. WIREs Data Mining Knowl Discov 2015, 5:1–20. doi: 10.1002/widm.1142

Different types of secondary substructures in RNA. (Reprinted with permission from Ref . Copyright 1992).
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Algorithmic Development > Biological Data Mining
Algorithmic Development > Structure Discovery
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