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WIREs RNA
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Computational Analyses of RNA

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Compositional biases in RNA viruses: Causes, consequences and applications

Advanced Review
Eleanor R. Gaunt, Paul Digard
Published Online: Jun 22 2021
DOI:10.1002/wrna.1679

Abstract Full article on Wiley Online Library:   HTML | PDF
Evolutionary conservation of RNA sequence and structure

Advanced Review
Elena Rivas
Published Online: Mar 22 2021
DOI:10.1002/wrna.1649

Abstract Full article on Wiley Online Library:   HTML | PDF
Intron retention and its impact on gene expression and protein diversity: A review and a practical guide

Advanced Review
William Ritchie, Marie‐Louise Hammarskjold, David Rekosh, Bandana Kumari, Lucile Broseus, David F. Grabski
Published Online: Oct 18 2020
DOI:10.1002/wrna.1631

Abstract Full article on Wiley Online Library:   HTML | PDF
Control of translation by eukaryotic mRNA transcript leaders—Insights from high‐throughput assays and computational modeling

Advanced Review
Christina Akirtava, Charles Joel McManus
Published Online: Aug 31 2020
DOI:10.1002/wrna.1623

Abstract Full article on Wiley Online Library:   HTML | PDF
Conservation of a core neurite transcriptome across neuronal types and species

Advanced Review
Nicolai Kügelgen, Marina Chekulaeva
Published Online: Feb 14 2020
DOI:10.1002/wrna.1590

Abstract Full article on Wiley Online Library:   HTML | PDF
Computational methods for ribosome profiling data analysis

Focus Article
Stephen J. Kiniry, Audrey M. Michel, Pavel V. Baranov
Published Online: Nov 24 2019
DOI:10.1002/wrna.1577

Abstract Full article on Wiley Online Library:   HTML | PDF
Recent methodology progress of deep learning for RNA–protein interaction prediction

Advanced Review
Xiaoyong Pan, Yang Yang, Chun‐Qiu Xia, Aashiq H. Mirza, Hong‐Bin Shen
Published Online: May 08 2019
DOI:10.1002/wrna.1544

Abstract Full article on Wiley Online Library:   HTML | PDF
Computational approaches for circular RNA analysis

Overview
Tobias Jakobi, Christoph Dieterich
Published Online: Feb 20 2019
DOI:10.1002/wrna.1528

Abstract Full article on Wiley Online Library:   HTML | PDF
Environmental influences on RNA processing: Biochemical, molecular and genetic regulators of cellular response

Advanced Review
Athma A. Pai, Francesca Luca
Published Online: Sep 14 2018
DOI:10.1002/wrna.1503

Abstract Full article on Wiley Online Library:   HTML | PDF
High throughput sequencing revolution reveals conserved fundamentals of U‐indel editing

Advanced Review
Laurie K. Read, Rachel M. Simpson, Sara L. Zimmer
Published Online: Jun 11 2018
DOI:10.1002/wrna.1487

Abstract Full article on Wiley Online Library:   HTML | PDF
A 360° view of circular RNAs: From biogenesis to functions

Advanced Review
Jeremy E. Wilusz
Published Online: Apr 14 2018
DOI:10.1002/wrna.1478

Abstract Full article on Wiley Online Library:   HTML | PDF
Genetic variants in mRNA untranslated regions

Overview
Valeria Orrù, Michael B. Whalen, M. Laura Idda, Maristella Steri
Published Online: Mar 26 2018
DOI:10.1002/wrna.1474

Abstract Full article on Wiley Online Library:   HTML | PDF
Physics‐based all‐atom modeling of RNA energetics and structure

Advanced Review
Louis G. Smith, Jianbo Zhao, David H. Mathews, Douglas H. Turner
Published Online: Aug 17 2017
DOI:10.1002/wrna.1422

Abstract Full article on Wiley Online Library:   HTML | PDF
Microexons: discovery, regulation, and function

Advanced Review
Dmytro Ustianenko, Sebastien M. Weyn‐Vanhentenryck, Chaolin Zhang
Published Online: Feb 11 2017
DOI:10.1002/wrna.1418

Abstract Full article on Wiley Online Library:   HTML | PDF
Bioinformatic tools for analysis of CLIP ribonucleoprotein data

Focus Article
Supriyo De, Myriam Gorospe
Published Online: Dec 23 2016
DOI:10.1002/wrna.1404

Abstract Full article on Wiley Online Library:   HTML | PDF
Advances in RNA molecular dynamics: a simulator's guide to RNA force fields

Advanced Review
Srivathsan V. Ranganathan, Alan A. Chen, Sweta Vangaveti
Published Online: Oct 04 2016
DOI:10.1002/wrna.1396

Abstract Full article on Wiley Online Library:   HTML | PDF
Identifying fusion transcripts using next generation sequencing

Advanced Review
Shailesh Kumar, Sundus Khalid Razzaq, Angie Duy Vo, Mamta Gautam, Hui Li
Published Online: Aug 02 2016
DOI:10.1002/wrna.1382

Abstract Full article on Wiley Online Library:   HTML | PDF
Evolutionary clues in lncRNAs

Advanced Review
Anne Nitsche, Peter F. Stadler
Published Online: Jul 19 2016
DOI:10.1002/wrna.1376

Abstract Full article on Wiley Online Library:   HTML | PDF
Transcending the prediction paradigm: novel applications of SHAPE to RNA function and evolution

Advanced Review
Katrina M. Kutchko, Alain Laederach
Published Online: Jul 10 2016
DOI:10.1002/wrna.1374

Abstract Full article on Wiley Online Library:   HTML | PDF
New insights from cluster analysis methods for RNA secondary structure prediction

Advanced Review
Christine Heitsch, Emily Rogers
Published Online: Mar 11 2016
DOI:10.1002/wrna.1334

Abstract Full article on Wiley Online Library:   HTML | PDF
Functionalities of expressed messenger RNAs revealed from mutant phenotypes

Focus Article
Ben‐Yang Liao, Meng‐Pin Weng
Published Online: Jan 07 2016
DOI:10.1002/wrna.1329

Abstract Full article on Wiley Online Library:   HTML | PDF
Splicing noncoding RNAs from the inside out

Advanced Review
Li Yang
Published Online: Oct 01 2015
DOI:10.1002/wrna.1307

Abstract Full article on Wiley Online Library:   HTML | PDF
Regulatory RNAs discovered in unexpected places

Advanced Review
Jun Wei Pek, Katsutomo Okamura
Published Online: Oct 01 2015
DOI:10.1002/wrna.1309

Abstract Full article on Wiley Online Library:   HTML | PDF
Biogenesis, identification, and function of exonic circular RNAs

Advanced Review
Iju Chen, Chia‐Ying Chen, Trees‐Juen Chuang
Published Online: Jul 31 2015
DOI:10.1002/wrna.1294

Abstract Full article on Wiley Online Library:   HTML | PDF
Computational challenges, tools, and resources for analyzing co‐ and post‐transcriptional events in high throughput

Advanced Review
Philip J. Uren, Luiz O. F. Penalva, Andrew D. Smith, Christine Vogel, Patricia Rosa de Araujo, Dat T. Vo, Emad Bahrami‐Samani
Published Online: Dec 16 2014
DOI:10.1002/wrna.1274

Abstract Full article on Wiley Online Library:   HTML | PDF
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