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RNA Methods

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Methods for spatial and temporal imaging of the different steps involved in RNA processing at single‐molecule resolution

Advanced Review
Fatu Badiane Markey, Vijay Parashar, Mona Batish
Published Online: Jun 16 2020
DOI:10.1002/wrna.1608

Abstract Full article on Wiley Online Library:   HTML | PDF
Conservation of a core neurite transcriptome across neuronal types and species

Advanced Review
Nicolai Kügelgen, Marina Chekulaeva
Published Online: Feb 14 2020
DOI:10.1002/wrna.1590

Abstract Full article on Wiley Online Library:   HTML | PDF
The potential of engineered eukaryotic RNA‐binding proteins as molecular tools and therapeutics

Advanced Review
Carl R. Shotwell, John D. Cleary, J. Andrew Berglund
Published Online: Nov 03 2019
DOI:10.1002/wrna.1573

Abstract Full article on Wiley Online Library:   HTML | PDF
Methods for analysis of circular RNAs

Focus Article
Poonam R. Pandey, Rachel Munk, Gautam Kundu, Supriyo De, Kotb Abdelmohsen, Myriam Gorospe
Published Online: Sep 05 2019
DOI:10.1002/wrna.1566

Abstract Full article on Wiley Online Library:   HTML | PDF
Chemo‐enzymatic treatment of RNA to facilitate analyses

Advanced Review
Andrea Rentmeister, Katja Hartstock, Nils Muthmann
Published Online: Aug 08 2019
DOI:10.1002/wrna.1561

Abstract Full article on Wiley Online Library:   HTML | PDF
Classical and emerging techniques to identify and quantify localized RNAs

Focus Article
J. Matthew Taliaferro
Published Online: May 01 2019
DOI:10.1002/wrna.1542

Abstract Full article on Wiley Online Library:   HTML | PDF
Intriguing circles: Conflicts and controversies in circular RNA research

Advanced Review
Hui‐Min Li, Xiu‐Lan Ma, Hong‐Gang Li
Published Online: Apr 29 2019
DOI:10.1002/wrna.1538

Abstract Full article on Wiley Online Library:   HTML | PDF
Computational approaches for circular RNA analysis

Overview
Tobias Jakobi, Christoph Dieterich
Published Online: Feb 20 2019
DOI:10.1002/wrna.1528

Abstract Full article on Wiley Online Library:   HTML | PDF
The evolution of RNA structural probing methods: From gels to next‐generation sequencing

Advanced Review
Valerie Vivet‐Boudou, Redmond P. Smyth, Roland Marquet, Jean‐Christophe Paillart, Elodie Mailler
Published Online: Nov 28 2018
DOI:10.1002/wrna.1518

Abstract Full article on Wiley Online Library:   HTML | PDF
Gaining insight into transcriptome‐wide RNA population dynamics through the chemistry of 4‐thiouridine

Advanced Review
Erin E. Duffy, Jeremy A. Schofield, Matthew D. Simon
Published Online: Oct 28 2018
DOI:10.1002/wrna.1513

Abstract Full article on Wiley Online Library:   HTML | PDF
Contributions of regulated transcription and mRNA decay to the dynamics of gene expression

Advanced Review
Toshimichi Yamada, Nobuyoshi Akimitsu
Published Online: Oct 01 2018
DOI:10.1002/wrna.1508

Abstract Full article on Wiley Online Library:   HTML | PDF
Targeting RNA in mammalian systems with small molecules

Advanced Review
Anita Donlic, Amanda E. Hargrove
Published Online: May 03 2018
DOI:10.1002/wrna.1477

Abstract Full article on Wiley Online Library:   HTML | PDF
RNA versatility, flexibility, and thermostability for practice in RNA nanotechnology and biomedical applications

Advanced Review
Peixuan Guo, Hang Yu, Haibo Hu, Shanqing Gu, Zhengyi Zhao, Fengmei Pi, Farzin Haque
Published Online: Nov 03 2017
DOI:10.1002/wrna.1452

Abstract Full article on Wiley Online Library:   HTML | PDF
Rules and tools to predict the splicing effects of exonic and intronic mutations

Advanced Review
Kinji Ohno, Jun‐ichi Takeda, Akio Masuda
Published Online: Sep 26 2017
DOI:10.1002/wrna.1451

Abstract Full article on Wiley Online Library:   HTML | PDF
Advances and challenges in the detection of transcriptome‐wide protein–RNA interactions

Opinion
Emily C. Wheeler, Eric L. Van Nostrand, Gene W. Yeo
Published Online: Aug 29 2017
DOI:10.1002/wrna.1436

Abstract Full article on Wiley Online Library:   HTML | PDF
Single cell transcriptomics of noncoding RNAs and their cell‐specificity

Opinion
Junhyong Kim, Katerina A.B. Gawronski
Published Online: Aug 01 2017
DOI:10.1002/wrna.1433

Abstract Full article on Wiley Online Library:   HTML | PDF
An emerging model organism Caenorhabditis elegans for alternative pre‐mRNA processing in vivo

Advanced Review
Hidehito Kuroyanagi, Shotaro Wani
Published Online: Jul 13 2017
DOI:10.1002/wrna.1428

Abstract Full article on Wiley Online Library:   HTML | PDF
Bioinformatic tools for analysis of CLIP ribonucleoprotein data

Focus Article
Supriyo De, Myriam Gorospe
Published Online: Dec 23 2016
DOI:10.1002/wrna.1404

Abstract Full article on Wiley Online Library:   HTML | PDF
Advances in RNA molecular dynamics: a simulator's guide to RNA force fields

Advanced Review
Alan A. Chen, Srivathsan V. Ranganathan, Sweta Vangaveti
Published Online: Oct 04 2016
DOI:10.1002/wrna.1396

Abstract Full article on Wiley Online Library:   HTML | PDF
Fluorophore‐binding RNA aptamers and their applications

Focus Article
Elena V. Dolgosheina, Peter J. Unrau
Published Online: Aug 08 2016
DOI:10.1002/wrna.1383

Abstract Full article on Wiley Online Library:   HTML | PDF
Evolutionary clues in lncRNAs

Advanced Review
Anne Nitsche, Peter F. Stadler
Published Online: Jul 19 2016
DOI:10.1002/wrna.1376

Abstract Full article on Wiley Online Library:   HTML | PDF
Going global: the new era of mapping modifications in RNA

Advanced Review
Patrick A. Limbach, Mellie June Paulines
Published Online: Jun 01 2016
DOI:10.1002/wrna.1367

Abstract Full article on Wiley Online Library:   HTML | PDF
Lights, camera, action! Capturing the spliceosome and pre‐mRNA splicing with single‐molecule fluorescence microscopy

Advanced Review
Aaron A. Hoskins, Ian S. Norden, Alexander C. DeHaven
Published Online: May 20 2016
DOI:10.1002/wrna.1358

Abstract Full article on Wiley Online Library:   HTML | PDF
RNA‐Seq methods for transcriptome analysis

Advanced Review
Radmila Hrdlickova, Masoud Toloue, Bin Tian
Published Online: May 19 2016
DOI:10.1002/wrna.1364

Abstract Full article on Wiley Online Library:   HTML | PDF
Virus‐derived small RNAs: molecular footprints of host–pathogen interactions

Advanced Review
Eric Roberto Guimarães Rocha Aguiar, Roenick Proveti Olmo, João Trindade Marques
Published Online: May 12 2016
DOI:10.1002/wrna.1361

Abstract Full article on Wiley Online Library:   HTML | PDF
Bioengineering of noncoding RNAs for research agents and therapeutics

Advanced Review
Pui Yan Ho, Ai‐Ming Yu
Published Online: Jan 13 2016
DOI:10.1002/wrna.1324

Abstract Full article on Wiley Online Library:   HTML | PDF
RNA structural analysis by evolving SHAPE chemistry

Advanced Review
Robert C. Spitale, Ryan A. Flynn, Eduardo A. Torre, Eric T. Kool, Howard Y. Chang
Published Online: Aug 15 2014
DOI:10.1002/wrna.1253

Abstract Full article on Wiley Online Library:   HTML | PDF
miRNA sponges: soaking up miRNAs for regulation of gene expression

Advanced Review
Rasmus O. Bak, Jacob Giehm Mikkelsen
Published Online: Dec 23 2013
DOI:10.1002/wrna.1213

Abstract Full article on Wiley Online Library:   HTML | PDF
Means to an end: mechanisms of alternative polyadenylation of messenger RNA precursors

Advanced Review
Mihaela Zavolan, Walter Keller, Georges Martin, Andreas R. Gruber
Published Online: Nov 14 2013
DOI:10.1002/wrna.1206

Abstract Full article on Wiley Online Library:   HTML | PDF
Finding the target sites of RNA‐binding proteins

Advanced Review
Xiao Li, Hilal Kazan, Howard D. Lipshitz, Quaid D. Morris
Published Online: Nov 11 2013
DOI:10.1002/wrna.1201

Abstract Full article on Wiley Online Library:   HTML | PDF
Prospects for analyzing ancient RNA in preserved materials

Advanced Review
Paul L. Guy
Published Online: Nov 07 2013
DOI:10.1002/wrna.1199

Abstract Full article on Wiley Online Library:   HTML | PDF
Cytoplasmic intron retention, function, splicing, and the sentinel RNA hypothesis

Advanced Review
Peter T. Buckley, Mugdha Khaladkar, Junhyong Kim, James Eberwine
Published Online: Nov 04 2013
DOI:10.1002/wrna.1203

Abstract Full article on Wiley Online Library:   HTML | PDF
Messenger RNA‐based vaccines: progress, challenges, applications

Focus Article
Thomas Kramps, Jochen Probst
Published Online: Jul 25 2013
DOI:10.1002/wrna.1189

Abstract Full article on Wiley Online Library:   HTML | PDF
RNA Tectonics (tectoRNA) for RNA nanostructure design and its application in synthetic biology

Advanced Review
Junya Ishikawa, Hiroyuki Furuta, Yoshiya Ikawa
Published Online: Jul 08 2013
DOI:10.1002/wrna.1185

Abstract Full article on Wiley Online Library:   HTML | PDF
Ribosome profiling: a Hi‐Def monitor for protein synthesis at the genome‐wide scale

Advanced Review
Pavel V. Baranov, Audrey M. Michel
Published Online: May 20 2013
DOI:10.1002/wrna.1172

Abstract Full article on Wiley Online Library:   HTML | PDF
The human mitochondrial transcriptome and the RNA‐binding proteins that regulate its expression

Advanced Review
Oliver Rackham, Timothy R. Mercer, Aleksandra Filipovska
Published Online: Jul 09 2012
DOI:10.1002/wrna.1128

Abstract Full article on Wiley Online Library:   HTML | PDF
Protein–RNA footprinting: an evolving tool

Advanced Review
Dominique Fourmy, Satoko Yoshizawa
Published Online: May 07 2012
DOI:10.1002/wrna.1119

Abstract Full article on Wiley Online Library:   HTML | PDF
RNA biology in a test tube—an overview of in vitro systems/assays

Overview
Xavier Roca, Fedor V. Karginov
Published Online: Mar 22 2012
DOI:10.1002/wrna.1115

Abstract Full article on Wiley Online Library:   HTML | PDF
Identification of RNA–protein interaction networks using PAR‐CLIP

Advanced Review
Manuel Ascano, Markus Hafner, Pavol Cekan, Stefanie Gerstberger, Thomas Tuschl
Published Online: Dec 27 2011
DOI:10.1002/wrna.1103

Abstract Full article on Wiley Online Library:   HTML | PDF
RNAi screening: new approaches, understandings, and organisms

Advanced Review
Stephanie E. Mohr, Norbert Perrimon
Published Online: Sep 22 2011
DOI:10.1002/wrna.110

Abstract Full article on Wiley Online Library:   HTML | PDF
Viruses and microRNAs: a toolbox for systematic analysis

Advanced Review
Diana Lieber, Jürgen Haas
Published Online: Jul 07 2011
DOI:10.1002/wrna.92

Abstract Full article on Wiley Online Library:   HTML | PDF
Single‐molecule direct RNA sequencing without cDNA synthesis

Focus Article
Fatih Ozsolak, Patrice M. Milos
Published Online: Mar 14 2011
DOI:10.1002/wrna.84

Abstract Full article on Wiley Online Library:   HTML | PDF
HuR's role in gemcitabine efficacy: an exception or opportunity?

Advanced Review
Jonathan R. Brody, Gregory E. Gonye
Published Online: Nov 30 2010
DOI:10.1002/wrna.62

Abstract Full article on Wiley Online Library:   HTML | PDF
RNA diagnostics: real‐time RT‐PCR strategies and promising novel target RNAs

Focus Article
Günter Mayer, Jens Müller, Christina E. Lünse
Published Online: Sep 27 2010
DOI:10.1002/wrna.46

Abstract Full article on Wiley Online Library:   HTML | PDF
RNA in the classroom: beyond the “RN‐ABCs”

Editorial Commentary
Jeff Wilusz
Published Online: Aug 20 2010
DOI:10.1002/wrna.38

Abstract Full article on Wiley Online Library:   HTML | PDF
Delivery of RNAi mediators

Focus Article
Lance P. Ford, Masoud M. Toloue
Published Online: Aug 17 2010
DOI:10.1002/wrna.12

Abstract Full article on Wiley Online Library:   HTML | PDF
HITS‐CLIP: panoramic views of protein–RNA regulation in living cells

Advanced Review
Robert B. Darnell
Published Online: Aug 02 2010
DOI:10.1002/wrna.31

Abstract Full article on Wiley Online Library:   HTML | PDF
‘Posttranscriptional’: to life scientists, no longer a postscript

Editorial Commentary
Jeff Wilusz
Published Online: Jun 03 2010
DOI:10.1002/wrna.21

Abstract Full article on Wiley Online Library:   HTML | PDF
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